rs48046451 SNP Detail

Summary

• ID
  rs48046451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122207449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGAGGG AAAGGGGAGA
  GGGAAAGAGA AGGAGAGGGG AATGGAAAGA GAAAGGGAAG GGGTAGGGAG GGGGAGGGAG
  GGGGGAGGGG AGGGGGGAGG AGGGAGAGCA GGCTGCAGAC TTTGGTGATG AGGACAAGTC
  CTGAAGCGAC CGGGTCAAAT ACGGACAAGC AGGTTTAAAT GGACCTTTAA TAGAAAATAA
  R
  CCTGTGTTGC TAGGCACATT TCTTTCACCC TCTCACTATT CAGCAAGTGC TGAGCAGGGC
  CCATTAAACC ATAGCCTTCA TGCCATGAAT TCTCCAGCCA ATGTGGCAAC GAGTAAACAG
  CTGTTCTGCC AACCTCTTGG ACGCAGACTG CCTGCCTGCC CGCCTGCCTG CCCAGCTTAC
  TAGCGGGGGA TTGCCACGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60442578	NES15946487	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	G	G	G	A	G	G	G	G
ss135741124	ENSMUSSNP1064561	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48046451					SNP	G	A	G	A	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60442578	NES15946487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122207449 () rs orientation: forward

Symbol	Name	Function Class
Rr584323	regulatory region 584323	1905 bp distal
Rr584324	regulatory region 584324	within coordinates