rs48045179 SNP Detail

Summary

• ID
  rs48045179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152987472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCCTCC CCTGGGTAAA
  TTAAATAAAG CAATTATATG ATTATTTTAG ATAAACATAA ACTGTTATTA CTGTTATGAT
  AGTTGGTAGT TCTATTGCTT TGGGGACACA AAAGATAAAT TGGTTTTTAA GAATGCCTGG
  TGTGGGGCTG GAGAGATGGC TCAATGGTTA CAAGCATGGA CAGCTTTGTC CCAGAGGACC
  S
  GAATTCAGTT CCCAGCATCC ATATCAGGTG GCTCACAACC ACCTGTAACT ACAGCTCCAT
  GAATTGACAT TCCCTTCTGG GCTTCATGGG AGCCTGCTCA TAAACCCACT ACATACACAT
  GAATAATGAA AAAAATATGC CGGACATTGC TCCCGGGGTG TGTCTGAGTC ATGAAACCTG
  GGTGTTGCTG AGTCATGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136107398	ENSMUSSNP423569	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321030492	CHEV_3_152944799	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48045179					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152987472 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			293 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant