rs48043706 SNP Detail

Summary

• ID
  rs48043706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36121305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGTGCC CTCAGGCTTT
  GGCCCAGTGG CCAGTGGTTT TCTCCACATT GCTCACTTCT CATTCCCATT CCTACCCCAC
  CCACCATTAG TAACTAATGC AGATATGTAC TTAATGTTTG TTCTGAATGC ATGTTAGGCC
  TCAGGTTTCT GAAAAAAAAA TTCTTTTCTT TGTATCTCTT TTGTTAGTTC CTTGGTTTCT
  Y
  AACCTGTAGA CCTTGGCCAG TGTCTCTGGT AGCCCAGTTG AAGTCAGAGG CAGTGTCGTT
  GTTGTTTGTG TTGTTTTGTT CTTCTTCTTT TTAATGTGGA GGTGGCAGGT GTATTGATTG
  CTTGCTTTTG AGACAGTCTC ACTGAGACTT TCTGCCTCTG CCTTCCTTCA TGAGAGCTAG
  ATTGAAATTG TATGCCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60387993	NES15892805	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48043706					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60387993	NES15892805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36121305 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acad9	acyl-Coenzyme A dehydrogenase family, member 9			Intron
				Noncoding-Transcript-Variant
Cpgi13079	CpG island 13079			637 bp distal
Rr575305	regulatory region 575305			1954 bp distal
Rr575306	regulatory region 575306			1774 bp distal
Rr575307	regulatory region 575307			1079 bp distal
Tssr28859	transcription start site region 28859			1152 bp downstream
Tssr28860	transcription start site region 28860			1093 bp downstream
Tssr28861	transcription start site region 28861			1054 bp downstream
Tssr28862	transcription start site region 28862			1038 bp downstream