rs48039259 SNP Detail

Summary

• ID
  rs48039259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130910335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTG CAGTTGTTCA CTTTGCTATC
  R
  CATGTGAACT TTGTCGTGCA CCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598350	ENSMUSSNP1037542	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48039259					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130910335 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	531 bp distal
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	805 bp downstream
Tssr20240	transcription start site region 20240	297 bp upstream
Tssr26336	transcription start site region 26336	1084 bp upstream
Tssr26337	transcription start site region 26337	251 bp upstream
Tssr26338	transcription start site region 26338	40 bp downstream
Tssr26339	transcription start site region 26339	114 bp downstream
Tssr26340	transcription start site region 26340	196 bp downstream
Tssr26341	transcription start site region 26341	461 bp downstream
Tssr26342	transcription start site region 26342	482 bp downstream
Tssr26343	transcription start site region 26343	536 bp downstream
Tssr26344	transcription start site region 26344	591 bp downstream