rs48039204 SNP Detail

Summary

• ID
  rs48039204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145800087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGGACA TGCAGGCTGC
  CTTTGTGCTG TTCTCGCCGA GCTGGGGTAA TATTTCCCAC CTGAGGATTT GCACAGTGAC
  CTGGCTAGCA GCCTGTGTTA CACACATCTC TCTGCCTCAA GGGAAGCCAG CCTGTGCCTT
  CCCTCTAGAA TGCTGGTTAT AGAGAAAGGA CAAGATGTTG CAGCCATGAA GCAGTCTGCG
  R
  AACTGTCACC AAGAGGCTTG ACCGGGTTGC TAAGAAGAGT TCTTGGGCTC TAGGGTGCCA
  CCATGTACCT CCTGGCGAGG TGACATAGTG AAGGATGAAT ATGTTCGTCT TCCGGAAGGC
  TGGTTAGAGC CACCACACAG GGCATTCTTA GTTTTGCCAC GCCCTAAGTT TGAAAGATAC
  ACAAATTGCC AAGTGAGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320539043	CHEV_2_145783903	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48039204					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145800087 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr397368	regulatory region 397368	399 bp downstream
Rr566613	regulatory region 566613	1128 bp distal
Rr566614	regulatory region 566614	250 bp distal
Rr566615	regulatory region 566615	523 bp distal
Rr566616	regulatory region 566616	within coordinates