rs48032909 SNP Detail

Summary

• ID
  rs48032909
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41361861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAAGTTA AAGACAGAAA
  TCATAGATAA ATTGGTATAT GAGTATTGGG ATTAACATCT TACAATTACG GTGATGGTGA
  AACACTAAAT TCATTTTTAA CTAATCATTG GGGATTCTAT TATTTTACTA TGTTAACCAT
  TCAGGCATCT AACAAATGTG CAAAGTGTTG TTAATGATTC TCCATTATGT TCTAGGTATT
  W
  CTCTTCTAAT TAATGAATAA GCACATACAA TTGTGATTTG GGCACCGAAA AATACCTAAA
  TTGAATAATT GCCTAATTTT GGAAGTACTA ATTATGAAAG AATGATTGTA AGACCTTTGA
  AAAGCTGAAT GTTGTCAACT CTAATGCCAA GATAATCTGA AGTGGTTCGT TTGTCCTCAT
  TGCCCACAGT GTAGTAGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60600942	NES16305536	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48032909					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600942	NES16305536	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41361861 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77029	transcription start site region 77029	1939 bp downstream
Tssr77030	transcription start site region 77030	913 bp downstream
Tssr77031	transcription start site region 77031	659 bp downstream
Tssr77032	transcription start site region 77032	404 bp downstream
Tssr77033	transcription start site region 77033	145 bp downstream
Tssr77034	transcription start site region 77034	82 bp downstream
Tssr77035	transcription start site region 77035	838 bp upstream
Tssr77036	transcription start site region 77036	1991 bp upstream