rs48027739 SNP Detail

Summary

• ID
  rs48027739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138768212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG AGGTTTTCTG GGAGGGGCCA
  Y
  ATCTAGGGTA CCTTTCCTGT AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147663476	ENSMUSSNP5991639	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321378840	CHEV_4_138596816	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48027739					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138768212 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603085	regulatory region 603085			102 bp distal
Rr603086	regulatory region 603086			1738 bp proximal
Tmco4	transmembrane and coiled-coil domains 4			Intron
				Noncoding-Transcript-Variant