rs48027161 SNP Detail

Summary

• ID
  rs48027161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122206152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCTATAT TCTTGAGGTA CACTTTAAAA TGCTGGGTTC
  AAGTTAGCAT CCTGCCTATG CCTGCCAAGT AGATGGAATT ACAGATATGT GCTAGATAGC
  Y
  CCTAGATAGC CCTGGACAGT CCTGGATAGC CCTGGATAGC CCCTGGTCTG AGAAGGCAAT
  GCTTTTCTGT CTTCTTTGCT TTTCACTTCG TGCTTCGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135741077	ENSMUSSNP1524285	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320911404	CHEV_3_122115421	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48027161					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122206152 () rs orientation: forward

Symbol	Name	Function Class
Rr584323	regulatory region 584323	608 bp distal
Rr584324	regulatory region 584324	1239 bp proximal