rs48027046 SNP Detail

Summary

• ID
  rs48027046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41360728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTTACT AACACTTAAC
  TGTAGCTCCT TCTATATGCT AAACCTATAA TATGTTCAAT TTTTAAGCCA TTTTTTGACT
  TGATAATTTT AATGCTTAAA ACTATTACAT ATACCAAAGA GCAATCTATA GGATGCAAAA
  TCATGGTAAT ATGAAAATAT GTAATCACTG CATAAATGGG TGGCTTACTG TGGCATAAAA
  Y
  TGATTGATCT TTTTAATTTC CTGGTAATTT GGGAATTCTG TTTTCTGAAT TATTAACCCT
  AAGACATTTT AGTGGTTGAC CATTTAATTT TGCAAAGTCT AATTCATTTT TAATTCAGTA
  GCCATCATTG ATAGAAACAA ATGACTTGCA ATGCTGTCTT TGGTCTTTTA ATTTGGTTGG
  GCAAGTAAAG AGTAACACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60600952	NES16305517	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48027046					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600952	NES16305517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41360728 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77024	transcription start site region 77024	1867 bp downstream
Tssr77025	transcription start site region 77025	1820 bp downstream
Tssr77026	transcription start site region 77026	1410 bp downstream
Tssr77027	transcription start site region 77027	1081 bp downstream
Tssr77028	transcription start site region 77028	976 bp downstream
Tssr77029	transcription start site region 77029	806 bp downstream
Tssr77030	transcription start site region 77030	209 bp upstream
Tssr77031	transcription start site region 77031	355 bp upstream
Tssr77032	transcription start site region 77032	714 bp upstream
Tssr77033	transcription start site region 77033	977 bp upstream
Tssr77034	transcription start site region 77034	1040 bp upstream
Tssr77035	transcription start site region 77035	1971 bp upstream