rs48023477 SNP Detail

Summary

• ID
  rs48023477
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139972053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG GCTCCCGTGC CTTTCTACAA
  M
  GTCTAGCGTC TTCTCGGTGG CGCTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147694899	ENSMUSSNP962266	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48023477					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139972053 () rs orientation: forward

Symbol	Name	Function Class
Gm69798	predicted gene, 69798	1662 bp upstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603404	regulatory region 603404	524 bp distal
Rr603405	regulatory region 603405	673 bp proximal