rs48022942 SNP Detail

Summary

• ID
  rs48022942
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103106254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCAACA TACTATAAAT
  AGTATACTCA ATAGCAACAA TACTATAAAT GGGTCTGTGT TTAGATGAAA CCACTATTAC
  AAATAGAACC ACCATAAATC TATACGATAT AACTATTTTA ACACAATTTT AAAGTTTATG
  ACTGTAAAAC TAACAACCAA TAGCGTAGCT GAGACAATGA ACCCAGTAGT CTATGAACTG
  S
  TGAGACTGAC ACCCAACTGG GTCTATGACT GCAGCTCCTT GAGAGACTAA GGTTGGAGGA
  TCACAATTTT GAAGCTACCC TGGGGCAGCA TTTTATTCAT GTTATTAGCC TCAAAACAAA
  AAGTAAAAGA GGGTGTGTGT TTGGGAGGTG GGGTCTAGAC CACTGGTAGA GCACTGCCTA
  GCATGTGCAA GTCCATACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147139502	ENSMUSSNP5938141	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321236284	CHEV_4_102921662	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48022942					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103106254 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	within coordinates
Rr596380	regulatory region 596380	800 bp proximal