rs48022766 SNP Detail

Summary

• ID
  rs48022766
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181208509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCAAA AAACCGGAAC
  CAAGGGCTGG TGAGATGGCT CAGTGGGTTA GAGCACCTGA CTGCTCTTCC GAAGGTCCAG
  AGTTCAAATC CCAGCAACCA CATGGTGGCT CACAACCATC CGTAACGAGA TCTGACTCCC
  TCTTCTGGAG TGTCTGAAGA CAGCTACAAT GTACTTACAT ATAGTAAATA AATAAATCTT
  W
  AAAAAAAAAA ACTGGAACCA AAAACAAAAC AAAACACCAC CCTGACCTCC AGCTCTGAAT
  TTGACTGTGG AGAGTCTCAA CACTTCACAG CCTCAGGGCA TGATGGTGCA TACTTCAAAT
  GCTAGAACTT GGGAGGCAGA AGAAATCAGA TGTCTGTAAG TTTGAGGCAG CCTAGTCTTT
  ACAGTGGGTT CCAGGCCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356780900	MGP_WTSI_2_181301421	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	T	T	T	T	A	T	T	T	T	A	A	A	T	A	A	T	T	A	T	T	A	T	T	A	A	A	T	A	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48022766					SNP	T	T	T	A	T	T	T	T	A	T	T	T	T	A	A	A	T	A	A	T	T	A	T	T	A	T	T	A	A	A	T	A	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356780900	MGP_WTSI_2_181301421	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181208509 () rs orientation: forward

Symbol	Name	Function Class
Rr573031	regulatory region 573031	1609 bp proximal
Rr573032	regulatory region 573032	1700 bp proximal