rs48021535 SNP Detail

Summary

• ID
  rs48021535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAGAATG GCTATATTTA
  TAGCTTCCTA GCACTGATAA CAAAGTGCTA GTACTCTTTT ATCTTCCATA TCTTACGCTT
  CCAGAGGTTG GGGTGAGCCC AGAATTTGGG GGAACCAACA TACAGGCAGT AGCAGGGTAT
  CTGCTCTTTG GAGGCTGAAG GAGAGAAGTC ATTTCCTCAC CCTTTCCTCG TGGAGACTGA
  Y
  GACACTCCTT GGCTTGTGAA TATTCTCACA GCAAGACTTC CTGGCTGTGC CTCTCCTGCC
  TTCCTTTTAC CTACAGAGAC CCTTAGAATA TTAAATTTGT GCCTAACTAG TAGCACAGGA
  TAATCTTCCG GGCACAAAAT ACTTGATCAC ATCTGCACAA TCTGTCTCCA AAAGAAGGGG
  TATGGATATT TCAAAAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146246457	ENSMUSSNP6042614	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321100063	CHEV_4_44087639	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48021535					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1700 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	2000 bp distal
Rr591150	regulatory region 591150	1503 bp distal
Rr591151	regulatory region 591151	1770 bp distal
Rr591152	regulatory region 591152	581 bp distal
Tssr41485	transcription start site region 41485	1746 bp upstream