rs48017009 SNP Detail

Summary

• ID
  rs48017009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18840570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACATAGG AGGATAGGAG
  GTTGCCATTA AGAAGTGCTA TAGCCCTCTG GCTGACTCTG GTGACCTGAC TGGGAGCAAT
  TGGAGATGAA GAAGAAGAAA ATATAAAGCA GACTAGAATC TGGATTTGGA TGGCATGGCT
  TACTAGCTTG TATGGAGTGA ATACTCTGTG TGTTTATTAC ACACAGGGAA AACAAGGAGT
  R
  GCCAGCTAAT CACAATAGGG GATCTCGGCA CAGGGAAAGT CAGTCTCTTC AGTAAATGAT
  GCAGAAAAGC TGTGTTCACA TGTCGAAGAA TGAAACCAAT TGTCCATGCT CACCCTGTTC
  CAAATGTACC TAGGATCTGA AACTCTAAAA CCAACATATA GGAAATAGGC AGCAACTTTC
  TAAATAGAAC TCCAGTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60374586	NES15887933	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48017009					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60374586	NES15887933	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18840570 () rs orientation: forward

Symbol	Name	Function Class
Gm65711	predicted gene, 65711	within coordinates
Rr374612	regulatory region 374612	1928 bp upstream
Rr573923	regulatory region 573923	1189 bp proximal