rs48016331 SNP Detail

Summary

• ID
  rs48016331
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18417536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTGTTG ATATGATAAA
  ATGCCATGAC AAAAAAAAAA AAAAAAAAAC AACTTGGGAA GAAAGGGTTA ATTTCAGCTA
  ACAAGTTATG ATACATGATG TAGGGAAGTC AGGGAAGGAA TTCCAGACAT GGAAGTAGGA
  ACTGAAGCAG TGGTCATGGA GGAAAGCTAC TAACTGCCTT GCTCTTCATG GCTTGAACCA
  M
  ATGTTTTCTA TATAAAGTCC AAGACCACTT GCCAAGGGGT GGAGGTAAGG GCTAGGTCAC
  TACCCACAGT GGGTGGGCCC TCCTACATAA ATTATTAATC AAGGTAATGC CCTACACATT
  TCCTACAGGC TCACAGGCCA ATCAGAGGGA AGTAATTTCT TAATCAAGGT TCCCTCTTCT
  TAGGTGACTC TAATTCCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133034514	ENSMUSSNP5085572	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48016331					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18417536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			516 bp upstream
Rr626921	regulatory region 626921			362 bp proximal