rs48012750 SNP Detail

Summary

• ID
  rs48012750
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153569030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATATAAAT CTGTCAAAGA
  AACTCGATTG CTAGAAAGCA CATAAACACT GAGAAGGAGG AGGGGTAGGC AAAGAAAGGG
  AAAGAAGGTT TGCCGTAAGA GACACGCATT GTTTTGAGGT CTACGTTTAA ATTCTATATG
  CAGTACCATA GTTCTTTTCT TCTGTGAGTC CCCTGGAAAG TTTGTAAGTA TACAAAATTG
  M
  ATCTTTATTT CTTGAGGTAT TCTTCACATG CTGAACTTCA AAATGCATGT TTTCTACATT
  AAGATACAGG GCATCTAGAT GGCATAGTTC CAGGAAATGG GTAGTGAAGA GTGTAAATGC
  CTACAACACA TAACAAACAA TGAGTGTGAG TACTTTTAAA TGATCTAGAA AACTCAATTA
  TTTAAACATA ACACATTAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136114605	ENSMUSSNP3020006	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48012750					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153569030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm24395	predicted gene, 24395			1414 bp upstream
Msh4	mutS homolog 4			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr587782	regulatory region 587782			1454 bp proximal