rs48011829 SNP Detail

Summary

• ID
  rs48011829
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137774412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTTCTG GATTCAGGCG
  CCACACTGCC AGGAAAAGCA AGAGCAGTGG AGGCTAAAGA CCTTGCAGTA CAGAGCCCCT
  GAGATGGCCA TGGGTGGCAG AGGCTTCAAC GTGCACATGC TTGCATGGAG AGATGTTGGA
  CTTCCGTCAT GAGATTACAC AGGGAATTAT GGGGTATAGG ACATGAGATT ACATTGGGGA
  A
  TTATGGGGTA TAGGACATGA GGTTACATGG GGGAATTACG GGTTGTGGGA CATGAGATTA
  CATGGGGGAG TTATGGGGTA TAGGACATGA GGTTACATGG GGGAATTACG GGTTGTGGGA
  CATGAGATTA CATGGGGAAT TATGGGGTAT AGGACATGAG ATTACATGGG GAATTACAGG
  TTGTGGAACA TGAGATTACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147630413	ENSMUSSNP4155894	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48011829					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137774412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Rr602827	regulatory region 602827			1110 bp distal
Rr602828	regulatory region 602828			1018 bp distal
Tssr39818	transcription start site region 39818			1747 bp downstream
Tssr39819	transcription start site region 39819			1291 bp downstream