rs48004425 SNP Detail

Summary

• ID
  rs48004425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116015980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGACAG TCTGTTCCGA
  AGGCCTTGGA ACCAAGTTAG TCGACGACGC TGGAGCTAGA ATCCTGAGTT AGTTCTCAGG
  TGGGTGTGCC AAGCAAAAAT CTTTTTTCCC CCTCATCTTG TTAATTAGTG GCATTTCCAT
  GTAATCCCTA AATTGTCCAT ATGGTGCTAT ATATCCACTT ATATATGGTA CTTATATCCT
  R
  ATTCCTGGAA ATGCTGTCTA GATAAAATTG CATACACAGA CTAAGAGAAT AAGTTGTCTT
  GCCTTCGAGC TGACTTCACA GTCTAGTGAC AAAGAGATAA TACTTTCTTC CAACTGTCAT
  CTCCACTTGT GAAAAGTGGT CCTGCGGTCT GGAATGTTCC CTTGCCCCCG GACACCATAA
  AGAGGCTGGC AGAGGAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437879	NES15932728	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48004425					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437879	NES15932728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116015980 () rs orientation: forward

Symbol	Name	Function Class
Rr583673	regulatory region 583673	144 bp distal
Rr583674	regulatory region 583674	180 bp proximal