rs48000376 SNP Detail

Summary

• ID
  rs48000376
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116102952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACAGAGC AAGTTCCAGG
  ACAGCTAGGG CTGCACAGAG AAAAACTGTC TTGAAAAACT TAAAATGGAT GGATGGATAG
  ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGCAGA ATCCTTGTCC CTTAAGAAAT
  TCCTACTTTA ATAAGGGAGA AGTGAACAGC TGAGATCCAG CACGTTGAGG CCCTGTGACC
  S
  AGGCTCAGAC AAGATCCAAG GCAAAGGGGC CCAGCCCTAT CTAAAGAAAT CAGACATTCC
  CTATGAGCTC AGAAGCCAAG TGTCTGTGTG CACATGCATC CACTCACATG TATGCACATA
  CACACCTTTC TCTTTCTTCT CTGTTTCTCT CTCTCTGTGT GTCTCTCTGC TTATCTCTCT
  CCTCTCCCTC TCCCTCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60437545	NES15931065	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48000376					SNP	G	G	G	G	G	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437545	NES15931065	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116102952 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr583690	regulatory region 583690			1886 bp proximal