rs48000251 SNP Detail

Summary

• ID
  rs48000251
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7733269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCTAG TTTGGTTGGC
  AGTACATTTT CCCCAAATTA CAAATTATAA ATGTGACACA AACCAAATTC TTATATTCTA
  CTTTTTTAAA CCGTTAGACA AGTGTTTCCT ATCGAAATTT ACGTCCCTCA AGTCAGAATG
  CCTTGCATGA GACTGTGCAA TAAAATCACT GCCCACCAGG TGGCAGTCAT GGTACAGTAG
  M
  TCTCAAAGAC TGGCGTTGAT TGGGGAGTTG CTCAACGTTT AAACAGAGTT GCCATCTGAC
  CCAGTAATTC CATTCTTAGA TTTATACGCA GGAAAGTGTA AAACACATGT CTATACAAAA
  ACTTGTACAT GAACGCTTGT GACTATTAAC GGTAGTCAAA ATGTAAAGTA CCCAGTGTCC
  AGACACTAAG AAGGCCATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132954126	ENSMUSSNP1213782	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48000251					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7733269 () rs orientation: forward

Symbol	Name	Function Class
Rr626314	regulatory region 626314	813 bp distal
Rr626315	regulatory region 626315	within coordinates
Rr626316	regulatory region 626316	11 bp distal