rs47998372 SNP Detail

Summary

• ID
  rs47998372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148149211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTATCAG CAGGAGAGCC
  AGTGGCTCAG GCCACTCGCA CCAGTCCCTG GCCTCGCTCC TGGACTCTCC TGCACTGTCC
  ACCATCCCGC CAGCAGCTGC TTCCACAGAC CCATCACAGC CCCACAGTTC CAATTCCAGG
  CCCAGCGAGC AGCCAGCTCT CCCTGGGCCC GTGGAGTACC GCTGCTCCAG CTGAGGAGGA
  Y
  ACTGGGGAGG AGGGGGAATA TCCGCTCTGA GCACAGCCCT TAGGCCAGCC TCACCTCTTC
  CTCCCCGCAG CAACAGGTAT GGCCTGGGTG GATCTTTTCC CGGCTCTGAT AAACAGATTA
  GAGGGGTCTG GGGCCCTTCC AAAGGACATA ATGACAGATG ACAGGACTAC AAAGGGCCCT
  CAACCTCCGA TGCCCAGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147991198	ENSMUSSNP5536684	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47998372					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148149211 () rs orientation: forward

Symbol	Name	Function Class
Gm13201	predicted gene 13201	within coordinates
Gm66468	predicted gene, 66468	within coordinates
Rr604572	regulatory region 604572	1077 bp proximal
Rr604573	regulatory region 604573	1215 bp proximal
Rr604574	regulatory region 604574	1453 bp proximal