rs47996658 SNP Detail

Summary

• ID
  rs47996658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7559618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTGTATT CATTTCCTTA
  AAGAACCAAC TTTGGTTTAC TTTAAAATTT TATTGAGAGA GTGATATATA TGAGGATTTA
  GAGAGAGGAA AGGGAAGGGA GAACTGTTTT AATTATATTA TAATCTTAAA AAGTAGTAGA
  AAATCATTGA ATTAAGTAAA TTTTTCAAGT AATTGAGACT CTATTCATTT TCTGTAGCAC
  R
  ATTTGAAGAA TCGAGTTTTA TGATGTTTTC TAAATAACAA ATCAAAAAGT GTACATATCA
  GAAAGTACAT AAGAAAGATA ATGATATTGC ATTACATATT AGGATATTTG CAGGTAAACT
  TATTTACATT TCACAACATA GAACTTAAAG CAGGAGCATT CAAAACAAAA ATAATTACCT
  AAAATTAATC CTCACAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134557402	ENSMUSSNP3662882	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47996658					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7559618 () rs orientation: forward

Symbol	Name	Function Class
Gm66025	predicted gene, 66025	within coordinates
Rr573246	regulatory region 573246	1885 bp distal
Rr573247	regulatory region 573247	1678 bp proximal