rs47996627 SNP Detail

Summary

• ID
  rs47996627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:8603647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGAAGGGGGC TGGCATGAGG TCACTGTCCC TATTATAAAA
  GGCTTCTTTG GCCCCAACAA GAAATCATAT CAAGGAAGAA AGACCGCAAG TGTGCCCTTC
  R
  CTTTTATATA GGAAGGTCCC TAGGTGCACA ACCCCACCGC TAACCACTCA GCAAGGTCAA
  TACTAACATG TCTTCAGCAA CACTTCACAG GAGCCGAAGG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss131662715	ENSMUSSNP3273956	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47996627					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8603647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr442578	regulatory region 442578			within coordinates
Rr442579	regulatory region 442579			97 bp distal
Tns3	tensin 3			Intron
				Noncoding-Transcript-Variant
Tssr100310	transcription start site region 100310			1972 bp upstream
Tssr106844	transcription start site region 106844			459 bp upstream