rs47984772 SNP Detail

Summary

• ID
  rs47984772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43902391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATCTTTC CTCAAAGAGG
  CTGCACTTGA AATACGGGGG ACAAAACTGT GACCGTCTCC TTTTGTAGAG GAACACGCTG
  CCTCTCAAAC CTAACGTCCC TCTTGAAAAC TGGTGTTACT AGTTAAGTCA CTCACACGAA
  GTAGGTGCTT AGAAAATCCC AAGCTGAGAC TGTATCTAAA ATCATTTTAA AATGGTAGTC
  Y
  TTTCTTAGAT GCCGAAGACA AATAACACAG ATTCTCTCTG GAAGAAGGGA ATTTTATTCC
  AGACTTAAAG CTCCCACAGA TAAAATTCTA AGGAAAGTAA GCAACTCACA GTTAAAAAAA
  AATCACAAAC CTTACTAGAG AACAAGGCCA TGAGACAAGA GCCAGCAGGA ACAGTGGGGA
  ACAGAATAAA CCTCAGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146244085	ENSMUSSNP7233418	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47984772					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43902391 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591101	regulatory region 591101			1404 bp proximal