rs47980748 SNP Detail

Summary

• ID
  rs47980748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96979995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG GGCCTGGACT CTAATATCCA
  Y
  GACCCTTGAA CATCTGCGAG ATACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145438013	ENSMUSSNP1181944	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47980748					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96979995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd21	potassium channel tetramerisation domain containing 21			1539 bp upstream
Rr400445	regulatory region 400445			1303 bp upstream
Rr651401	regulatory region 651401			1248 bp distal
Rr651402	regulatory region 651402			within coordinates
Rr651403	regulatory region 651403			1222 bp proximal
Rr651404	regulatory region 651404			1524 bp proximal
Rr651405	regulatory region 651405			1550 bp proximal
Tssr67964	transcription start site region 67964			1523 bp upstream
Tssr67965	transcription start site region 67965			1850 bp upstream
Tssr73573	transcription start site region 73573			1229 bp downstream
Tssr73574	transcription start site region 73574			1315 bp downstream
Tssr73575	transcription start site region 73575			1328 bp downstream
Usp35	ubiquitin specific peptidase 35			Intron
				Noncoding-Transcript-Variant