rs47979374 SNP Detail

Summary

• ID
  rs47979374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130908965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTCAGC AACCACATGG
  TGGCTCACAA CCATCTGTAA TGGGATCCAA TGTCCTCTTC TGGTGTGTCT GAAGACAGTG
  ACAGTGTACC TACATACATG AAATAAATAA ATAAATATCT GAGAGAGACA GACAGACAGA
  CACTGGCTAG TCATCTCACA ATGTTCTCAT GTTTAAAATA TGATACCATT TGTATAAAGC
  W
  GAAACACAGG AAAAATAAAA TCTGTGGTAT TATATTTGAT TTTTAAATTA ACTTGATTAG
  TGAAGTTAGC AGCTACACTG GGCAGGGGTT GGGAGTGGGG TACTCTGAAG TGCTGGTATT
  TCTGGTTTTG TTTTTTGTTT GTTTGTTTTT TTATCTTATT TATATTACAT AGAAAGCCAT
  TTTGCTAATA CACTTACCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598337	ENSMUSSNP2800392	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47979374					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130908965 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	575 bp proximal
Tssr20240	transcription start site region 20240	1667 bp upstream
Tssr26336	transcription start site region 26336	241 bp downstream
Tssr26337	transcription start site region 26337	1080 bp downstream
Tssr26338	transcription start site region 26338	1410 bp downstream
Tssr26339	transcription start site region 26339	1484 bp downstream
Tssr26340	transcription start site region 26340	1566 bp downstream
Tssr26341	transcription start site region 26341	1831 bp downstream
Tssr26342	transcription start site region 26342	1852 bp downstream
Tssr26343	transcription start site region 26343	1906 bp downstream
Tssr26344	transcription start site region 26344	1961 bp downstream