rs47975469 SNP Detail

Summary

• ID
  rs47975469
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTATAATT TCTGCTAACT
  CTTTCTCATC CTTGAAGTCT CAACATACGT GTCACCAAAG AGGACTCCAT TGACCTCTCT
  ACTTGTCATT TCCTGAGTCT CCCTGTCACC AAACCTTTTC ATTTTTTCCC TTGCAATCAT
  CAAAATATAC CATAAGGAAT TTGTTTTCAT GTTTAGTGTC TCCTAACCTG AATTAGAATG
  A
  AATGCCTTGA GGACAGAAAC CTTATCCTTC TGATTTTATA TTATAACATC TAGCACAGTA
  CCTGGCACAT TTCAGCCTTG CAGTGTTTCT GGAATGGATG AATGGCTGCC ATATTGATGA
  TAGCCAAATG TGCTTGCATA CAACTTTAAT CTCAGCACTA GAAGCCAGAG GCAGGTGGAT
  TTCTGTGAGT TTAAGGCCAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147988457	ENSMUSSNP3616042	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47975469					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084589 () rs orientation: forward

Symbol	Name	Function Class
Plagl2	pleiomorphic adenoma gene-like 2	1311 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	1254 bp distal
Rr567589	regulatory region 567589	1081 bp distal
Rr567590	regulatory region 567590	692 bp distal
Tssr20880	transcription start site region 20880	1743 bp downstream
Tssr20881	transcription start site region 20881	1726 bp downstream
Tssr20882	transcription start site region 20882	1203 bp downstream
Tssr20883	transcription start site region 20883	1066 bp downstream
Tssr20884	transcription start site region 20884	1051 bp downstream
Tssr26895	transcription start site region 26895	1315 bp upstream
Tssr26896	transcription start site region 26896	1275 bp upstream
Tssr26897	transcription start site region 26897	1258 bp upstream
Tssr26898	transcription start site region 26898	1169 bp upstream
Tssr26899	transcription start site region 26899	945 bp upstream