rs47970529 SNP Detail

Summary

• ID
  rs47970529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86805782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGTTTA TAAATACATG
  GGTTGCACAC TAAGAATTTT CATTTATCTT TTTCTTTTTC CCTTTTGCAG TGCTGGGCAT
  GGAACCTGGG GCCCATTACT GAGCTATACC CAACTTTAAT GATGTTGAAA ACCATGTATA
  TTTGGTTTTT CTCCCTGTAC CAAAATATAC CCAAGAACAA CGTAAAGGAA TGCAGGTTGG
  Y
  TTTGCTCATG ATTTCGGGGG TCTCAGTGAA TGATCGGCTG GCCTCGCTGT ACTGGACCTG
  AGCCAAGACA GATGGCTGAG GCACACAGTA GAGAAGACTG TTCACCTCTG CCAACAAAAG
  GTGACAGAGA GATAAGAGTG AGAGCAGGAC ATGACCTCAC AGAAATGTGC CCAAGAAATT
  ATTGCTTGTG CTAGCTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss135450682	ENSMUSSNP2956297	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs47970529					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86805782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579411	regulatory region 579411			468 bp distal
Tssr33911	transcription start site region 33911			958 bp downstream