rs47966588 SNP Detail

Summary

• ID
  rs47966588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:100062488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGTAAC AGGGTGATGG
  CACAGGTTCA TTCAATCCTG TCCCTTTTTC CTCCTGAGGA TTCAACAACA CCGTATTTCC
  CAGTGTCCTG CACAGTTAGT TGATACCATA TGATAGAAGA TCATGGCCAG CGGCATGAGA
  GCAGCAGTTA GGGACAACTT TCCAGGCCTG TCACCTCCCA CAGGCCCTTC ACAATTTTCT
  Y
  CTCATCTGGG AGGCAGTCCA GGGAAGGGGG TGAGACCCTA GAAGGTGAAA GAACTGAAAG
  AGAAAAGGAA GCTGGGTCAT TGCATGTCGA AGCTGAGCCA GTCCCCAGTC CTTACTTACC
  AGGAAGAGAA GGGCTGGCCC AGGATGAGAA GTAAGATCTT ATACTCTAGC TGCTGAAATC
  TGGCTCGTTC ACACTAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133427065	ENSMUSSNP2674351	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47966588					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100062488 () rs orientation: forward

Symbol	Name	Function Class
Rr635572	regulatory region 635572	333 bp proximal
Rr635573	regulatory region 635573	1318 bp proximal