rs47966581 SNP Detail

Summary

• ID
  rs47966581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50397027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CGTGACAGTG TTCCGAACGT TCAGTTCCGC GTGTAAATAG
  GCCACACTGG CTGCACCGCA CAGGTGTTTC TTCCAGCGAG CCAGCTGCCA GAACTATGCT
  Y
  TAAACAAGAC TCACAAACCC AAGCCCTCTG CACGGAAGGA AGGCTTGGTT TTTTGGGTCA
  TCAAAGTTAG GTTTTTTTTG TTTTTTGTTT TTTTGTTTTT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135160741	ENSMUSSNP1456629	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47966581					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50397027 () rs orientation: forward

Symbol	Name	Function Class
Rr367428	regulatory region 367428	within coordinates
Rr576159	regulatory region 576159	1023 bp proximal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	934 bp upstream
Tssr29027	transcription start site region 29027	1169 bp upstream
Tssr33166	transcription start site region 33166	288 bp upstream
Tssr33167	transcription start site region 33167	134 bp downstream
Tssr33168	transcription start site region 33168	838 bp downstream
Tssr33169	transcription start site region 33169	878 bp downstream
Tssr33170	transcription start site region 33170	905 bp downstream
Tssr33171	transcription start site region 33171	934 bp downstream
Tssr33172	transcription start site region 33172	961 bp downstream
Tssr33173	transcription start site region 33173	1000 bp downstream
Tssr33174	transcription start site region 33174	1025 bp downstream
Tssr33175	transcription start site region 33175	1200 bp downstream