rs47964278 SNP Detail

Summary

• ID
  rs47964278
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146046466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTATCTC CAAATGTTCA
  CCCGACACTG AGTCCGGGTT CATTTCCAGA GGCAGCCAGT CTCATTAGGA ACCATGTTTT
  CTGGCCGCTG TGAGGCAGTT TCCACAGGGA CTCATTTTGG TAAGGGCCTC ATGGGAAGAA
  CCAGGTTTGC TCCTTGGAGT TGGGAAACAC AGCAGCAGTC AGGAAACTTC CTCTGCTGAG
  K
  CCAGGACATT TTCGGCTTTA CAGGTTGAGT CAGAACTGAG CCAGTGAACG ACTTTATTTT
  TTTCTCATTC GGCAATTTAC ATTTAGAAAG GAAAAAGGGT TATTAGCTCT CAAGCTGTAT
  GAAATATGAG ACTGGATTTC AGCCTGCAGG CAGACTTTCG AAGTCTCTGC ACAGCGTCCC
  CGTAGACAGC CATTAGGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136043352	ENSMUSSNP4910711	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss321009993	CHEV_3_146003675	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47964278					SNP	G	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146046466 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	1865 bp distal
Rr587006	regulatory region 587006	241 bp distal
Rr587007	regulatory region 587007	1284 bp proximal