rs47964217 SNP Detail

Summary

• ID
  rs47964217
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34073862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA CGGCCCGAGG CTCCAGAGGG
  G
  AGGCTCCATG AGGGCAAACC TGAGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134762065	ENSMUSSNP6899102	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320700965	CHEV_3_33918635	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47964217					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34073862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	within coordinates
Fxr1	FMR1 autosomal homolog 1	271 bp upstream
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	within coordinates
Rr575096	regulatory region 575096	75 bp proximal
Rr575097	regulatory region 575097	406 bp proximal
Tssr28785	transcription start site region 28785	156 bp upstream
Tssr28786	transcription start site region 28786	188 bp upstream
Tssr28787	transcription start site region 28787	204 bp upstream
Tssr28788	transcription start site region 28788	219 bp upstream
Tssr28789	transcription start site region 28789	234 bp upstream
Tssr28790	transcription start site region 28790	362 bp upstream
Tssr28791	transcription start site region 28791	370 bp upstream
Tssr32968	transcription start site region 32968	84 bp downstream