rs47963504 SNP Detail

Summary

• ID
  rs47963504
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142440405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAAGTC CTCAACTGTC
  AAGAGTAGGT CTCTGCCTTA GGAATATGGC TGAGCCAGTA TGCAAAGACA AACCCATCTC
  ATCTCTGGAT GAGGACAGAG CTGGGACTAG GGCAAACAGA GGGAGGCCTC AGGTACTAAA
  ACCCTCGACG GTTAAGATAA ATAGATTTGA ATGCAATGTT CTAAAAAATA AAATAAAATT
  W
  TAAGTATGTA CTCTGTACCC TACATTGCCT AGTTTCCTCT AAGCACACTC AGCCCTCAGG
  TACAAGATAA ATACATTCTG GACATCTAGT GTGCAGCACA ATCTCTCTAG CTAGGAATGA
  TATAGACTGG AAACTCTCAA AAGAATGAAC TCATGAATCT TCTCCCACCA CTGAGTCCTT
  ACAAACCCCC AACACCTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147736783	ENSMUSSNP229466	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss320531952	CHEV_2_142424221	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47963504					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142440405 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	627 bp proximal