rs47962882 SNP Detail

Summary

• ID
  rs47962882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152496493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT GCTGATCTGC CTGCCTGGTG
  Y
  TTCCCACATT CCTCAGGCCC CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147970926	ENSMUSSNP7038401	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320562926	CHEV_2_152480309	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47962882					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152496493 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	243 bp upstream
Rr374088	regulatory region 374088	598 bp downstream
Rr567410	regulatory region 567410	1002 bp distal
Rr567411	regulatory region 567411	232 bp distal
Rr567412	regulatory region 567412	within coordinates
Rr567413	regulatory region 567413	1281 bp proximal
Tssr26849	transcription start site region 26849	314 bp upstream
Tssr26850	transcription start site region 26850	307 bp upstream
Tssr26851	transcription start site region 26851	269 bp upstream
Tssr26852	transcription start site region 26852	240 bp upstream