rs47960929 SNP Detail

Summary

• ID
  rs47960929
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105020931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCCTGC TCACGTGTGT
  TCTCAAAGCA TTTTGCAGAG ACCTGCTGAT GTCTAATCAA GCCAAGTTAT AGCGGTTTAT
  GTTTCTGTCA TCAGACTGTG AACTCTTAGA AATAGAGGAC CTTGTTTTCT CCCCAGGGCA
  AGAAATGCAG TATCCCATGA GCAGCTTTTG AATACTTGGA GGCAGGGCAG AAAAGATACA
  S
  CACAGACAAC CAGGCTATGT TTAAGACTCT ATAAGTTGCT CAACAGCTTG TACCTATGGA
  AGGAAAAGTC CTTCATGAGA TAAGGCATGG AAAGAGATAC ACATTCAAGG CCATTTATTG
  ACTGGTATAT GGGGCACATC CATTCTTCTC AGATCCAGTT TCTTGCTCTG GAGGAAAGTA
  TTGTTGTCTC ACGGTGTTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60430905	NES15933408	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47960929					SNP	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430905	NES15933408	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105020931 () rs orientation: forward

Symbol	Name	Function Class
Gm40118	predicted gene, 40118	within coordinates
Rr582673	regulatory region 582673	519 bp proximal
Rr582674	regulatory region 582674	878 bp proximal