rs47959127 SNP Detail

Summary

• ID
  rs47959127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131109912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACCAAT CAGCCTGTTG
  GTGGAAGCTC TGGACTGCGC TTAGTTCAAT GGACCATTCA CACATTGTAG ACAAGCACAG
  GGTGAGGCTG AGGCTGAGAC TGCCACAGCA GTTGGCCTGT GATCTGGAAA GGACGCCATC
  ACTGGGATGA GCTTCCCTGC CACCCTGGCA GATAGGACAC AGGCTCTCTG TGGACCTTTG
  Y
  TCTGTCACTT TCAGAAGGCA CAGGGATAAA GGCTGCACCA CACCCAGCAA CCCCATCTCT
  GAGCCCTTTG TCTTACCTAG CTCCGCCCAC CCCATTGGGC TGCTTTTATG TAGTCATTTC
  AACTTCATCA GGGAGTCCAA ATGAAGCCTT CTGAAGCCTG CCTTGGACAT GGCTAGGGGT
  CCACTTGAGG TCATTACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61081004	NES16597785	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47959127					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61081004	NES16597785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131109912 () rs orientation: forward

Symbol	Name	Function Class
4930534D22Rik	RIKEN cDNA 4930534D22 gene	within coordinates
Rr585332	regulatory region 585332	within coordinates
Rr585333	regulatory region 585333	1214 bp proximal