rs47957039 SNP Detail

Summary

• ID
  rs47957039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147894369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAAAGATGAA ACCGCGGAAC TTCCCTTCAT GCTGCCTAGC
  CCCGCCTTCT GGACCCGCCC AATATTCAGC AGCTTCCTGC AATTCTTCTA AGCCTACCTA
  Y
  TTCGGGACCT TTTAATTAAT TAGCTTCCCA ATTCTTCACA GCAATGTTTG GTGTTTTGAA
  TTTTTGCTTG CTTGCTTGCT TGCTCGTTCC TTTGCTTTTA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147982831	ENSMUSSNP6661491	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47957039					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147894369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm20707	predicted gene 20707			72 bp upstream
Rr377386	regulatory region 377386			within coordinates
Rr398847	regulatory region 398847			1645 bp upstream
Rr604501	regulatory region 604501			1100 bp distal
Rr604502	regulatory region 604502			135 bp distal
Rr604503	regulatory region 604503			within coordinates
Tssr44548	transcription start site region 44548			91 bp upstream
Zfp984	zinc finger protein 984			Intron
				mRNA-UTR