rs47954859 SNP Detail

Summary

• ID
  rs47954859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55552233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATAATTA CCTAGTTAAG
  GTAAGCAGTA AGAGGGAACT GATATTTAGA AACATTGTTA AGGGGAGAGC AAACCAAAGG
  TGCTGGACTG CTGGAAAGCT GTTGAAAACC CGCCGACCTG TGCCTGGTCA CAGAGAACAC
  AGCCGACCTG TGCCTGGTCA CTCAGAACAC AGCCAGCCTG GTGTCTGGAC ACCAAGAGCA
  K
  AGCCGACTGT CCCCCAGTCA CACACTAGCT ACTATTTCAT TGTCAGAGTC TGGTGGACAG
  AGGAACAACA AGCATAGGCT CAGAAATAGT CTTAATCCCA AACCTTGTAT CCTTGCAAGG
  TACGTAAATG CTATCTTGTT GGGGGTGAGA AAAAGTCAAT ACCAGTCCGT TAGATCAAAA
  TAAAACCTGG ATCAAGTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135189236	ENSMUSSNP7167239	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47954859					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55552233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576982	regulatory region 576982			271 bp distal