rs47952149 SNP Detail

Summary

• ID
  rs47952149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119824719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC ATCTGTAGCT GAGAGTCCCA
  Y
  GGATGTTTAG CTGTACTCTG ACTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147347580	ENSMUSSNP638286	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320478233	CHEV_2_119819974	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47952149					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119824719 () rs orientation: forward

Symbol	Name	Function Class
D2Ertd210e	DNA segment, Chr 2, ERATO Doi 210, expressed	1425 bp proximal
Mapkbp1	mitogen-activated protein kinase binding protein 1	Intron
Rr563617	regulatory region 563617	1491 bp distal
Rr563618	regulatory region 563618	1311 bp proximal