rs47949921 SNP Detail

Summary

• ID
  rs47949921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115986002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTG CCCAAGGAGA CCAGAAGGGA
  R
  TATTGAATGG GAACTAGAGT TACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss133574479	ENSMUSSNP2261176	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321917108	CHEV_6_115959059	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs47949921					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115986002 () rs orientation: forward

Symbol	Name	Function Class
Gm53336	predicted gene, 53336	within coordinates
Rr637132	regulatory region 637132	1597 bp distal
Rr637133	regulatory region 637133	744 bp distal
Rr637134	regulatory region 637134	298 bp proximal
Rr637135	regulatory region 637135	849 bp proximal
Rr637136	regulatory region 637136	1409 bp proximal
Rr637137	regulatory region 637137	1684 bp proximal