rs47947899 SNP Detail

Summary

• ID
  rs47947899
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135795497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGTATG CATGTATGTC
  TGTATGAAGG TGCCAGACTC AAGTTTCACA GTTATGAGCT GTCACGTGGA TGCTGGGAAT
  CGAACCCAGG TCCTTTGGAA GAGCAGTCAG TGCTTTTAAT TAAAGGCTCA GTGGTTAAGG
  GCACTTGGTT TTCTTCCAGA GGACCTAGGC TCGGTTCCCA TCACTTACAT GGTGGTTCAC
  A
  ACAATCTCTA ACTCCAGTTC CTGGAGGATT CCTTGTCCTC TTTTGGCCTC CTCAGGCATT
  AGGCTATTAA TAAACAATCC CTTATTAATT TGTCTACTAT TTTCTATTAA TCTTTTAAAA
  ATTTCTTTTT ACACTTATTC ATGTGCGGTA TACATGTGTT TCTGGACACA TGCATGCTGT
  GCATGTGTGT AGAGGTCAGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147557316	ENSMUSSNP4401376	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47947899					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135795497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	1804 bp proximal
Rr602257	regulatory region 602257	1642 bp proximal
Rr602258	regulatory region 602258	1926 bp proximal