rs47947404 SNP Detail

Summary

• ID
  rs47947404
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43509795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCTCACT TCCCCTTCAT
  GAAGTGCAGT ATTCAGTGAC CTCTTTGTAC CTGTAATAAT CAAGAACGTA CACTCCAAGG
  TGGGAGGAAG CCAGGAAGTG AGGACGCCTA TGAGACTTAC CAGTGTGACA TTCACAGCAC
  AAAGTTCAGG GAAGTTCCTC AGGAGCAGGC GGGCAGGCGT GAGTTATTAA AGTGAACGCA
  A
  AGGCAGTACA AGTATAACAT ACATGATGGT CTTCTTCAGG AAACCACGGC GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GCGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGTGTAA ATAGTGATGA GTGAAACGAT GGACCTAGAT CTTGAGGGCC
  AGGCAGCCTG GGAAACTTTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146240455	ENSMUSSNP4441963	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47947404					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43509795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car9	carbonic anhydrase 9			Intron
				Noncoding-Transcript-Variant
Cpgi14193	CpG island 14193			921 bp distal
Gm12454	predicted gene 12454			1011 bp upstream
Rr591016	regulatory region 591016			521 bp distal
Rr591017	regulatory region 591017			1240 bp proximal
Tssr36975	transcription start site region 36975			896 bp downstream
Tssr41426	transcription start site region 41426			1061 bp upstream
Tssr41427	transcription start site region 41427			1042 bp upstream