rs47947108 SNP Detail

Summary

• ID
  rs47947108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145737175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAACTAACT GAAGCAACTG AAAAAGAACC CAATTCAAGG
  CCAGTGCTGG CTGATTTTAA ATTGACATAT AAAGAGGCAG TAATCAAAGC TGTAGAGTAC
  Y
  CACACCAACC TTAAATCCAG GAGTAGACTG AGGTGGGCAG CAAAGGAAGG CCAGTGGGAA
  AACGACGATC TTTATATACA AAATAAAAAC TGAGAACTGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61096109	NES16611255	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs47947108					SNP	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096109	NES16611255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145737175 () rs orientation: forward

Symbol	Name	Function Class
Gm40166	predicted gene, 40166	717 bp upstream
Rr586906	regulatory region 586906	1904 bp distal
Rr586907	regulatory region 586907	728 bp distal
Rr586908	regulatory region 586908	627 bp distal