rs47944953 SNP Detail

Summary

• ID
  rs47944953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125372578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTGGAG CCATGGCTGT
  CCTGAAACTC ACTATATAGG CCAGGCTGGC TTGGAACTCA GATCTGCCTG CCTCTGCTTC
  CCAAGTGCTG GGATTAAAGA GGTGAGCCAC CATGGGCGGC CTTTCACACC TCTGCTGTAG
  AGAACGGGAA GTAAAATCGG CTGTATCTGG AACCCGTGCT CCACACACGG GGTTCCTGTA
  Y
  GGCTGGAGAG GGACCATCAT TCAGGGGTAA AGACTTGCTG GAATGTTGAC AGTTTCCTTC
  CCTAACCCTC TGTGACAGAT AGCATGCTGT GTGAAGAGCC CGGCACAGCG GGGTGACCTC
  ATCCTTAGTA GAATTCCCTC AAGCCTGCAC AGTCACTGTT TAATTTCCAG CCAAGGCAAT
  ATCACCCCTC CCAGCCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147480322	ENSMUSSNP3745488	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47944953					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125372578 () rs orientation: forward

Symbol	Name	Function Class
Gm75244	predicted gene, 75244	within coordinates
Rr564232	regulatory region 564232	within coordinates