rs47943432 SNP Detail

Summary

• ID
  rs47943432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141170692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCCACA CCCCTGGCCA
  AGCTATGAAT ATGACCCATC TAGAAATTAC ACCATGAATC TTTAGTGTGC AGAGTCAGAG
  AGCTGCCTGT CTCTAGCCTC CAAGTGCTGG GATTAAGGTG TGCATCACAC TCAGCTAAGT
  CTTTGTTCTT TGAAGAGTTT TCAGTGAAAT TATAAATAAC AGTTAATATT CTGCAGTCCT
  R
  GCATAGTAAT TAAATACAAA CCCACCCTGG CTGCCAGCCC TGACCTTCTT CATGCCCTTC
  CCATATCACT TCCTCCCTGG GAATGGAGCC TGCATTCTCA GTCATGCTAG GCTAGTATTT
  TACCACTGAC CTACATCTTT AGTTCTAATC TAATTTCCAA CCTTCAGGAC ACTGAAGCCT
  GAGGTTTCCA TACGATAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737116	ENSMUSSNP2705277	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47943432					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141170692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	1100 bp proximal
Gm42337	predicted gene, 42337	605 bp downstream
Rr603768	regulatory region 603768	815 bp proximal
Rr603769	regulatory region 603769	1284 bp proximal
Rr603770	regulatory region 603770	1724 bp proximal
Tssr40079	transcription start site region 40079	1276 bp upstream
Zbtb17	zinc finger and BTB domain containing 17	1292 bp upstream