rs47941111 SNP Detail

Summary

• ID
  rs47941111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122213078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGATAATTT CTTTAGTGTT ACCGTTTTAC CTTTTATATG
  TAGATCTGAA GTCCTCAGGA TTTGATTTGG GGTGTGGGGT GGGGTGGGCA TCATGATTCT
  R
  TGACCTGGTA TCATATATTG AACTGTGTGC TGTACTCCCA CCGTTACCAC AGCAATCTTT
  GGCATAAACC AAGCCACCAG ATAGTGCAGA GATGACTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320911475	CHEV_3_122122347	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47941111					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122213078 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	328 bp upstream
Cpgi13768	CpG island 13768	124 bp proximal
Rr397985	regulatory region 397985	152 bp upstream
Rr584325	regulatory region 584325	226 bp distal
Rr584326	regulatory region 584326	within coordinates
Rr584327	regulatory region 584327	360 bp proximal
Tssr31494	transcription start site region 31494	310 bp upstream
Tssr31495	transcription start site region 31495	343 bp upstream
Tssr31496	transcription start site region 31496	364 bp upstream
Tssr31497	transcription start site region 31497	437 bp upstream
Tssr31498	transcription start site region 31498	556 bp upstream