rs47938691 SNP Detail

Summary

• ID
  rs47938691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:120953980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTACACA GATTCATACA GGACCTAGCA CATCTGTTAG
  AGTTTTTCTT TAATGGATGT CAATACCAGC TGCCAGGAAC TACTATTTTC AGACCCCATC
  Y
  GGAATCAGAG GCAGTAGCTA TTGCAAAGAC CATATAATAT TTTCTTTTAC ATATGTAATG
  TATATAGTAT TTTTAAAAAA ACTTCTCTAA ATATTACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135714706	ENSMUSSNP217765	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47938691					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120953980 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584007	regulatory region 584007			1515 bp proximal
Rwdd3	RWD domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr35395	transcription start site region 35395			1099 bp upstream