rs47936842 SNP Detail

Summary

• ID
  rs47936842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60958963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCTGGA ATGAACTACA
  ATCCAGAATT GGAAGGCTCA CCTGTGATCC AGATCTTGAG GCTGGGAGAA ATAAGTTTCT
  GACATGGATT TTGGCCTGGA GATTTTGAGG CATAGTGGCT ATGAGTCCCA GGAATCCAAG
  GCAAGGAGAG CTGAGTTTAA GGTCATCTGG GAAAAAGCAA GTCAGATCCA GGCATGGCAG
  Y
  ACACACCTTT AATCTGATCC ACACCTTCTG CTGGAGAACT ACAGAAGGAC ATTGGAAGAA
  GGAAGACTCT CTCTTCTTTA CCTGCTTGCT TTGTGGGACT GAGCAAGTGC TAGATCCTTG
  GACTTCATTC ACAGCTGCTG CTGATCATTG TTAGGGAGTT GGACTGCAGT CATCAACAAA
  TTCCTTTACT ATAGAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135222428	ENSMUSSNP1974961	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47936842					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60958963 () rs orientation: forward

Symbol	Name	Function Class
Rr577470	regulatory region 577470	912 bp distal