rs47935889 SNP Detail

Summary

• ID
  rs47935889
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84216847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCATAAC TCACACACAC
  ACACACATTC AGACACACAC ACACATACAC ACAGGAAATG AAAACAAAAA GGCAACCCAA
  CACAGAGGGA CAAATTTGCA AATCACATGT GTGATAAGGG ATCTTTAATA CAAAAAGAAT
  TTTTACTACA GAATAATAAT AATAATAATA CTTCAATTTT TAAAGGCTAA AGGATCTGAG
  W
  GATGACCAAT GAGCGCTATG GTTGGAGGGC ACCACAACAG AAAGAACTGA ATTAAAGGGT
  CGCAGCACTA GGAAGATTGA GGAACACTGG TAATGAATTC AAAGTCAGCG AAGATATATA
  TGAGCAGAGG GTAAAAAGCC CAGCTCTCTA GGGATAAAGA CCTAGAAACA CAAGGGCAAG
  GATACAGGAG CGAGCCAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146830293	ENSMUSSNP7181288	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss320371268	CHEV_2_84226660	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47935889					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84216847 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			1063 bp upstream
Rr560244	regulatory region 560244			910 bp distal
Rr560245	regulatory region 560245			573 bp proximal
Rr560246	regulatory region 560246			1074 bp proximal
Rr560247	regulatory region 560247			1582 bp proximal
Tssr24971	transcription start site region 24971			686 bp downstream