rs47934817 SNP Detail

Summary

• ID
  rs47934817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78691819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCCTTC TTCCCTTCTT
  CCCTTCTTTC ATCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCC
  TGTTCTTCTA TCTCTCTTTC TTTTTAAGAT AAAGAGATGA AGAATGAGTC TAAATTTGGG
  GGAGATGCAA AGTGGGACAA AGGACTTGGA GGGATGGAAA GAGAAGAACG TTTGGTGAGG
  R
  TGTGATGTAT GAGAAAAGAA TAAAAGGAAA AAAATCAGAG ATAATGCATT TTATTAATTA
  GTGATTGGTG GGGAAAGGCT TCCCTTTGAG GTAAACCTCA CGCGGCCTGG ACATGGACAG
  GATTGACAGA ATGATAGCTC TTTCTCGATT CCGTGGTTGG TGGGGTAAGG CTGTTCTTAG
  TTGGCAGAGC AAGTTGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146655425	ENSMUSSNP3794294	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47934817					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78691819 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	70 bp proximal
Tssr37651	transcription start site region 37651	108 bp upstream
Tssr37652	transcription start site region 37652	232 bp upstream
Tssr37653	transcription start site region 37653	459 bp upstream